When I fitted my B14s all round I got some degree of knock over the first 500 or so miles. Always at low speed at left rear and offside front and tricky to reliably reproduce, it drove me crazy! I had the car up on stands every other day checking nothing was loose or worn, I replaced the rear droplinks, I checked torque on all my work over and over but could not find the cause. Then, after that initial distance it all settled down. I had to assume it was the coilovers/car adjusting to a new ride position and it just needed 'bedding in' time.
Not to say there isn't something wrong but if you are asking a frame thats sat in one position for 8 or more years to then sit in a slightly new one I think a period of settling in is required. The other thing to note is, as Pudding mentioned, new ride height will adjust the strain on arb and droplinks etc so they might not appear or feel loose but actually are worn.