i think what 56OctyVRS is trying to say is that there's no flow over the end tanks, so their thermal convection properties are irrelevant. if anything, you want them to be poor absorbers of heat (i.e. made of plastic), because otherwise they'd store heat from the engine bay and warm your cool intake air as it passed through!
the core is the bit that cools the air as atmospheric air flows over it, and as this is unchanged, it's ability to cool air has not been affected.
i think on principle alone this makes sense, however NEITHER of you can say one is better than the other without objective proof which neither of you have. i'd let the OP make his own conclusion and leave it at that.