Well, I hope some manufacturers answer (because I want something a bit definite as well) but I'll take a stab at some of these with the big caveat that my understanding of fluid dynamics is elementary at best;
1) the OEM position - a small inlet just underneath the bonnet. Seems optimal, definitely getting cold air in from there, and Volkswagen use it for their cars (even on their race cars). There's some talk coming around from somewhere that seems to suggest that beyond a certain (high) speed that air no longer flows well into that inlet; I am not a CFD engineer but Volkswagen employs many I'm sure and would have ensured that this is not the case.
To me (and again, I'm not a CFD expert by any means) this does seem to me to be the most sensible area to locate an intake.
2) ITG/EVOMs location, behind the headlight - if you look in that area there is a lot of empty space. With the not-a-CFD-engineer caveat again, it seems to me that as you are driving along, an area of negative pressure will form there causing airflow into that position - hence the heatshield thing that the ITG and EVOMs intakes come with, to effectively block that portion off and optimise airflow to the intake. It makes sense, I suppose, but then why wouldn't Volkswagen have done this? It could be that this area becomes most effective at speed.
3) Underneath the nearside foglight grille - this is pretty simple, it's basically a ram scoop behind that area, exposed to lots of cold air. There is no "hot tarmac heat". However there are concerns that you could drive through a puddle and hydrolock the car (which still seems unlikely, as long as there is a little bit of filter exposed to air it's not going to be sucking in any water, and if the water is up to the grille you've got other things to worry about in any case). Need an open foglight grille really.
4) Over the top, HKS stylee - looks to use the OEM position, and by having the intake go over the top of the engine emulates the OEM style to a degree.
Which one is "best"? Well, with my limited understanding of CFD theory - OEM position 1) appears to be optimal for most applications. Position 2) might be more suited to very high speed applications rather than optimising airflow for most conditions. Position 3) seems unnecessary and mostly for the "cool" and "racer" factors (it's telling that the OEM VW racecars do not use this position). Position 4) - see notes for OEM position 1).
Any people more directly experienced with CFD want to chime in?