I have an issue with my mk6 but I think the resolution would be the same as the mk5.
I took the drivers door card off to change the mirror and then replaced the door card. The mirror works but the electric window controll on the drivers door doesn't. You can see there are no lights around the buttons so no power. I opened all of the windows by holding down unlock on the key fob but then when I went to hold down lock on the key fob all but the drivers window went up so now I have the drivers window permanently open!
Is there a way I can get the drivers window to shut and any ideas on what I have broken?