Coloured links are a fitment aid only and not critical. They are more common and useful on engines with several sprockets, but on the GTI with only 2 sprockets, it's no big deal.
So long as the cams are in the right position, you're golden. Just remember to tweak the inlet cam a few degrees anti clockwise when fitting the chain to make sure it has the correct tension. In other words, if the variator sprocket doesn't go straight on, tweak the inlet cam until it does. Lots of folk skip that (it's in the VW repair manual and they do a tool for it) and end up being a tooth off afterwards.
Think carefully about your parts choice because there is a lot of trash in the aftermarket and it's not a job you want to do more than once, especially it the car is a keeper.